Antigen

Antigen Class

TFs and others

Antigen

EP300

Cell type

Cell type Class

Blood

Cell type

GM12878

Tissue

blood

Lineage

mesoderm

Description

B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus

Sample

source_name

GM12878-p300

biomaterial_provider

GM12878

cell line

GM12878

chip antibody

mose monoclonal p300

chip antibody info

custom generated; 4C5_A1

Sequenced DNA Library

library_strategy

ChIP-Seq

library_source

GENOMIC

library_selection

ChIP

library_construction_protocol

Cells were fixed using 1% formaldehyde (NRSF samples) or 1% formaldehyde at 37C (p300 samples). Libraries were generated following Illumina's DNA Sample Prep Kit protocol

Sequencing Platform

instrument_model

Illumina HiSeq 2000

hg38

Number of total reads

21084086

Reads aligned (%)

69.4

Duplicates removed (%)

14.8

Number of peaks

494 (qval < 1E-05)

hg19

Number of total reads

21084086

Reads aligned (%)

68.9

Duplicates removed (%)

16.2

Number of peaks

690 (qval < 1E-05)